PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G234700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 502aa    MW: 56506.5 Da    PI: 8.083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G234700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.7e-07382429448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT  E   lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
  Prupe.6G234700.1.p 382 WTLSEVTTLVDGISEYGVGRWTDIKRVLFsssAYRTPIDLRDKWRNLL 429
                         ****************************9***99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-10374433IPR009057Homeodomain-like
PROSITE profilePS5129412.603374433IPR017930Myb domain
SuperFamilySSF466896.21E-15376446IPR009057Homeodomain-like
SMARTSM007171.1E-7378431IPR001005SANT/Myb domain
CDDcd116601.39E-16380430No hitNo description
PfamPF139215.5E-5382435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MDHEAHSRNK FVNMKSQRVK VEGSFAPALE DETETIEHLL AEPKSEYVTV DGVLCCGKEN  60
AGKCMDIEDF SCGYDFGLNT YSGGLHSAHP RGRYDELEFG VLDGLLDEVD EVEDIHAING  120
LASPCDDYLL DIGFTGKASE LGFGPCEKSH LGNSSSESQS PRLSGSSNGA VGISESSTVT  180
IQEFECKNNS IDKAVTHEFH GGFRRKKRHR TPVEGNVYPA SINLQNLELD NDEKSLVREI  240
VSGENEKLSV EATKLGAFCK EKRLRKPTLR YIEEFSGKKS KDSNERENCS AVTATQDRSK  300
VRCQNEHHHM SPGILSSVPE EDSISENQTL AEFRTQRKLA KKHASILALE SDEQPITSES  360
EDDHVPKKRS RKHDRRKHQR MWTLSEVTTL VDGISEYGVG RWTDIKRVLF SSSAYRTPID  420
LRDKWRNLLR ASCGKKMKKE VEQKEMRALP KSLVRRVREL AMVHPYPRQR GKKFAPPILP  480
TPSKSASSDL IRKYVRRKNR S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243959.10.0PREDICTED: uncharacterized protein LOC103342147 isoform X1
TrEMBLM5WGZ00.0M5WGZ0_PRUPE; Uncharacterized protein
STRINGVIT_08s0040g01640.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-19TRF-like 6